PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010552209.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C2H2
Protein Properties Length: 509aa    MW: 55731.9 Da    PI: 8.2955
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010552209.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-05107129123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +C+k F r  nL+ H r H
  XP_010552209.1 107 FICDICNKGFQRDQNLQLHRRGH 129
                     89*******************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-5106129IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.67E-6106129No hitNo description
PROSITE profilePS5015710.783107129IPR007087Zinc finger, C2H2
SMARTSM003550.027107129IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280109129IPR007087Zinc finger, C2H2
SMARTSM00355250149179IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.67E-6179204No hitNo description
SMARTSM00355150184204IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MDEMMNEDMP FHQHHRQQQQ VIAEENMSNL TSASGDHQAS VSSGNRTEAN GSNFVNQQQQ  60
QQQCFVPQLQ AQSSQPPKKK RNQPGNPDPE AEVIALSPKT LMATNRFICD ICNKGFQRDQ  120
NLQLHRRGHN LPWKLKQRSK TEAVRKKVYV CPEASCVHHE PSRALGDLTG IKKHFCRKHG  180
EKKWKCDKCS KRYAVQSDCK AHFKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESE  240
RANPTHQPNP ISIQSSYQTP QPNNPPPSYN NVVSNSGSSN NSNNLHGFSM KKEQEIDINF  300
THPPWLSPPP FPCSKAETPS VVFPSNPNPS FAAAGALFPS FHRPSPPSPA LSATALLQRA  360
AQMGATTTTP SPAEEIRSSS SHALKTTMAA VMTSPYPASG FGFSASGNAD NPSMFQGYNT  420
MNPAAGFEAF DESFGGFLRA NATTAAASVA PAVGEKYGGG RGIGEGLTRD FLGLTPLSHS  480
EILSFSDLGD CFSGNASEQQ QRRDHSQNP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135146KQRSKTEAVRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010552209.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_010552210.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_010552211.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_010552212.10.0PREDICTED: zinc finger protein NUTCRACKER-like
RefseqXP_010552213.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9LRW71e-173IDD11_ARATH; Protein indeterminate-domain 11
TrEMBLV4LDU40.0V4LDU4_EUTSA; Uncharacterized protein
STRINGBra021510.1-P1e-175(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15528306
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.11e-128indeterminate(ID)-domain 11